matrixTests - Fast Statistical Hypothesis Tests on Rows and Columns of Matrices

Functions to perform fast statistical hypothesis tests on rows/columns of matrices. The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use, 3) compatibility with tests implemented in R (like those available in the 'stats' package).

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anovafasthypothesis-testingmatrixrowst-testwilcoxon-test

7.86 score 35 stars 10 dependents 416 scripts 1.7k downloads

basetheme - Themes for Base Graphics Plots

Functions to create and select graphical themes for the base plotting system. Contains: 1) several custom pre-made themes 2) mechanism for creating new themes by making persistent changes to the graphical parameters of base plots.

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basegraphicsplotthemes

5.39 score 139 stars 35 scripts 412 downloads

annmatrix - Annotated Matrix: Matrices with Persistent Row and Column Annotations

Implements persistent row and column annotations for R matrices. The annotations associated with rows and columns are preserved after subsetting, transposition, and various other matrix-specific operations. Intended use case is for storing and manipulating genomic datasets which typically consist of a matrix of measurements (like gene expression values) as well as annotations about rows (i.e. genomic locations) and annotations about columns (i.e. meta-data about collected samples). But 'annmatrix' objects are also expected to be useful in various other contexts.

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matrixobjects3

3.85 score 14 stars 3 scripts 185 downloads