Package: annmatrix 0.1.2
annmatrix: Annotated Matrix: Matrices with Persistent Row and Column Annotations
Implements persistent row and column annotations for R matrices. The annotations associated with rows and columns are preserved after subsetting, transposition, and various other matrix-specific operations. Intended use case is for storing and manipulating genomic datasets which typically consist of a matrix of measurements (like gene expression values) as well as annotations about rows (i.e. genomic locations) and annotations about columns (i.e. meta-data about collected samples). But 'annmatrix' objects are also expected to be useful in various other contexts.
Authors:
annmatrix_0.1.2.tar.gz
annmatrix_0.1.2.zip(r-4.7)annmatrix_0.1.2.zip(r-4.6)annmatrix_0.1.2.zip(r-4.5)
annmatrix_0.1.2.tgz(r-4.6-any)annmatrix_0.1.2.tgz(r-4.5-any)
annmatrix_0.1.2.tar.gz(r-4.7-any)annmatrix_0.1.2.tar.gz(r-4.6-any)
annmatrix_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
annmatrix/json (API)
NEWS
| # Install 'annmatrix' in R: |
| install.packages('annmatrix', repos = c('https://karoliskoncevicius.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/karoliskoncevicius/annmatrix/issues
Last updated from:d41cc0773a. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 95 | ||
| source / vignettes | OK | 133 | ||
| linux-release-x86_64 | NOTE | 98 | ||
| macos-release-arm64 | NOTE | 120 | ||
| macos-oldrel-arm64 | NOTE | 99 | ||
| windows-devel | NOTE | 54 | ||
| windows-release | NOTE | 66 | ||
| windows-oldrel | NOTE | 60 | ||
| wasm-release | OK | 82 |
Exports:annmatrixas.annmatrixcolannscolanns<-is.annmatrixrowannsrowanns<-
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| annmatrix Objects and Basic Functionality | $.annmatrix $<-.annmatrix @.annmatrix @<-.annmatrix annmatrix colanns colanns<- rowanns rowanns<- |
| Auto Complete Functions for annmatrix Class | .AtNames.annmatrix .DollarNames.annmatrix autocomplete |
| Bind several annmatrix Objects Together | bind cbind.annmatrix rbind.annmatrix |
| Convert annmatrix Objects to and from Other Types | as.annmatrix as.annmatrix.default as.annmatrix.matrix as.matrix.annmatrix convert is.annmatrix |
| Group Generic Functions for annmatrix Class | chooseOpsMethod.annmatrix groupgenerics Ops.annmatrix |
| Matrix Generic Functions for annmatrix Class | %*%.annmatrix matrixgenerics |
| Principal Component Analysis for annmatrix Objects | pca prcomp.annmatrix |
| Print annmatrix Object | print print.annmatrix |
| Scaling and Centering of annmatrix Objects | scale scale.annmatrix |
| Stack an annmatrix object | stack stack.annmatrix |
| Subset annmatrix Objects | subset [.annmatrix |
| Transposing annmatrix Objects | t.annmatrix transpose |
