Package: annmatrix 0.1.2
annmatrix: Annotated Matrix: Matrices with Persistent Row and Column Annotations
Implements persistent row and column annotations for R matrices. The annotations associated with rows and columns are preserved after subsetting, transposition, and various other matrix-specific operations. Intended use case is for storing and manipulating genomic datasets which typically consist of a matrix of measurements (like gene expression values) as well as annotations about rows (i.e. genomic locations) and annotations about columns (i.e. meta-data about collected samples). But 'annmatrix' objects are also expected to be useful in various other contexts.
Authors:
annmatrix_0.1.2.tar.gz
annmatrix_0.1.2.zip(r-4.5)annmatrix_0.1.2.zip(r-4.4)annmatrix_0.1.2.zip(r-4.3)
annmatrix_0.1.2.tgz(r-4.4-any)annmatrix_0.1.2.tgz(r-4.3-any)
annmatrix_0.1.2.tar.gz(r-4.5-noble)annmatrix_0.1.2.tar.gz(r-4.4-noble)
annmatrix_0.1.2.tgz(r-4.4-emscripten)annmatrix_0.1.2.tgz(r-4.3-emscripten)
annmatrix.pdf |annmatrix.html✨
annmatrix/json (API)
NEWS
# Install 'annmatrix' in R: |
install.packages('annmatrix', repos = c('https://karoliskoncevicius.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/karoliskoncevicius/annmatrix/issues
Last updated 2 years agofrom:d41cc0773a. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 08 2024 |
R-4.5-win | NOTE | Nov 08 2024 |
R-4.5-linux | NOTE | Nov 08 2024 |
R-4.4-win | NOTE | Nov 08 2024 |
R-4.4-mac | NOTE | Nov 08 2024 |
R-4.3-win | NOTE | Nov 08 2024 |
R-4.3-mac | NOTE | Nov 08 2024 |
Exports:annmatrixas.annmatrixcolannscolanns<-is.annmatrixrowannsrowanns<-
Dependencies:
Readme and manuals
Help Manual
Help page | Topics |
---|---|
annmatrix Objects and Basic Functionality | $.annmatrix $<-.annmatrix @.annmatrix @<-.annmatrix annmatrix colanns colanns<- rowanns rowanns<- |
Auto Complete Functions for annmatrix Class | .AtNames.annmatrix .DollarNames.annmatrix autocomplete |
Bind several annmatrix Objects Together | bind cbind.annmatrix rbind.annmatrix |
Convert annmatrix Objects to and from Other Types | as.annmatrix as.annmatrix.default as.annmatrix.matrix as.matrix.annmatrix convert is.annmatrix |
Group Generic Functions for annmatrix Class | chooseOpsMethod.annmatrix groupgenerics Ops.annmatrix |
Matrix Generic Functions for annmatrix Class | %*%.annmatrix matrixgenerics |
Principal Component Analysis for annmatrix Objects | pca prcomp.annmatrix |
Print annmatrix Object | print print.annmatrix |
Scaling and Centering of annmatrix Objects | scale scale.annmatrix |
Stack an annmatrix object | stack stack.annmatrix |
Subset annmatrix Objects | subset [.annmatrix |
Transposing annmatrix Objects | t.annmatrix transpose |