Package: annmatrix 0.1.2

annmatrix: Annotated Matrix: Matrices with Persistent Row and Column Annotations

Implements persistent row and column annotations for R matrices. The annotations associated with rows and columns are preserved after subsetting, transposition, and various other matrix-specific operations. Intended use case is for storing and manipulating genomic datasets which typically consist of a matrix of measurements (like gene expression values) as well as annotations about rows (i.e. genomic locations) and annotations about columns (i.e. meta-data about collected samples). But 'annmatrix' objects are also expected to be useful in various other contexts.

Authors:Karolis Koncevičius [aut, cre]

annmatrix_0.1.2.tar.gz
annmatrix_0.1.2.zip(r-4.5)annmatrix_0.1.2.zip(r-4.4)annmatrix_0.1.2.zip(r-4.3)
annmatrix_0.1.2.tgz(r-4.4-any)annmatrix_0.1.2.tgz(r-4.3-any)
annmatrix_0.1.2.tar.gz(r-4.5-noble)annmatrix_0.1.2.tar.gz(r-4.4-noble)
annmatrix_0.1.2.tgz(r-4.4-emscripten)annmatrix_0.1.2.tgz(r-4.3-emscripten)
annmatrix.pdf |annmatrix.html
annmatrix/json (API)
NEWS

# Install 'annmatrix' in R:
install.packages('annmatrix', repos = c('https://karoliskoncevicius.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/karoliskoncevicius/annmatrix/issues

On CRAN:

matrixobjects3

3.81 score 13 stars 2 scripts 207 downloads 7 exports 0 dependencies

Last updated 2 years agofrom:d41cc0773a. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winNOTENov 08 2024
R-4.5-linuxNOTENov 08 2024
R-4.4-winNOTENov 08 2024
R-4.4-macNOTENov 08 2024
R-4.3-winNOTENov 08 2024
R-4.3-macNOTENov 08 2024

Exports:annmatrixas.annmatrixcolannscolanns<-is.annmatrixrowannsrowanns<-

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
annmatrix Objects and Basic Functionality$.annmatrix $<-.annmatrix @.annmatrix @<-.annmatrix annmatrix colanns colanns<- rowanns rowanns<-
Auto Complete Functions for annmatrix Class.AtNames.annmatrix .DollarNames.annmatrix autocomplete
Bind several annmatrix Objects Togetherbind cbind.annmatrix rbind.annmatrix
Convert annmatrix Objects to and from Other Typesas.annmatrix as.annmatrix.default as.annmatrix.matrix as.matrix.annmatrix convert is.annmatrix
Group Generic Functions for annmatrix ClasschooseOpsMethod.annmatrix groupgenerics Ops.annmatrix
Matrix Generic Functions for annmatrix Class%*%.annmatrix matrixgenerics
Principal Component Analysis for annmatrix Objectspca prcomp.annmatrix
Print annmatrix Objectprint print.annmatrix
Scaling and Centering of annmatrix Objectsscale scale.annmatrix
Stack an annmatrix objectstack stack.annmatrix
Subset annmatrix Objectssubset [.annmatrix
Transposing annmatrix Objectst.annmatrix transpose