{ "_id": "6a4f402521b18e15484ffaaf", "Package": "annmatrix", "Title": "Annotated Matrix: Matrices with Persistent Row and Column\nAnnotations", "Version": "0.1.2", "Authors@R": "person(\"Karolis\", \"Koncevičius\", email = \"karolis.koncevicius@gmail.com\", role = c(\"aut\", \"cre\"))", "Maintainer": "Karolis Koncevičius ", "Description": "Implements persistent row and column annotations for R\nmatrices. The annotations associated with rows and columns are\npreserved after subsetting, transposition, and various other\nmatrix-specific operations. Intended use case is for storing\nand manipulating genomic datasets which typically consist of a\nmatrix of measurements (like gene expression values) as well as\nannotations about rows (i.e. genomic locations) and annotations\nabout columns (i.e. meta-data about collected samples). But\n'annmatrix' objects are also expected to be useful in various\nother contexts.", "License": "GPL-2", "Encoding": "UTF-8", "URL": "https://github.com/karoliskoncevicius/annmatrix", "BugReports": "https://github.com/karoliskoncevicius/annmatrix/issues", "RoxygenNote": "7.2.3", "Repository": "https://karoliskoncevicius.r-universe.dev", "Date/Publication": "2023-05-14 07:43:33 UTC", "RemoteUrl": "https://github.com/karoliskoncevicius/annmatrix", "RemoteRef": "HEAD", "RemoteSha": "d41cc0773a90659e5607380db17cede3ccecb91f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-09 06:28:24 UTC", "User": "root" }, "Author": "Karolis Koncevičius [aut, cre]", "_user": "karoliskoncevicius", "_type": "src", "_file": "annmatrix_0.1.2.tar.gz", "_fileid": "https://r2.ropensci.org/8952ab96f452069ce0163d4429cd1649503d28155f461d348ae5b142d5f6d2e0", "_filesize": 144732, "_sha256": "8952ab96f452069ce0163d4429cd1649503d28155f461d348ae5b142d5f6d2e0", "_expires": "2026-10-17T06:30:59.000Z", "_created": "2026-07-09T06:28:24.000Z", "_published": "2026-07-09T06:31:01.483Z", "_jobs": [ { "job": 86054224932, "time": 103, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8190768516" }, { "job": 86054224954, "time": 107, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8190770016" }, { "job": 86054224910, "time": 108, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8190769744" }, { "job": 86054224917, "time": 113, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8190765493" }, { "job": 86053826543, "time": 176, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8190738894" }, { "job": 86054224936, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8190762067" }, { "job": 86054224922, "time": 80, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8190761964" }, { "job": 86054224960, "time": 74, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8190760664" }, { "job": 86054224931, "time": 71, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8190760388" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207", "_status": "success", "_upstream": "https://github.com/karoliskoncevicius/annmatrix", "_commit": { "id": "d41cc0773a90659e5607380db17cede3ccecb91f", "author": "KarolisKoncevicius ", "committer": "KarolisKoncevicius ", "message": "fixed stack() bug with duplicated row/column names\n", "time": 1684050213 }, "_maintainer": { "name": "Karolis Koncevičius", "email": "karolis.koncevicius@gmail.com", "login": "karoliskoncevicius", "twitter": "@kkoncevicius", "description": "", "uuid": 7273684 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" } ], "_owner": "karoliskoncevicius", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "matrix", "object", "s3" ], "_stars": 14, "_contributors": [ { "user": "karoliskoncevicius", "count": 146, "uuid": 7273684 } ], "_userbio": { "uuid": 7273684, "type": "user", "name": "Karolis Koncevičius", "followers": 74 }, "_downloads": { "count": 227, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/annmatrix" }, "_devurl": "https://github.com/karoliskoncevicius/annmatrix", "_searchresults": 56, "_rbuild": "4.6.1", "_assets": [ "extra/annmatrix.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/karoliskoncevicius/annmatrix", "_realowner": "karoliskoncevicius", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2023-05-02" }, { "version": "0.1.2", "date": "2023-05-14" } ], "_exports": [ "annmatrix", "as.annmatrix", "colanns", "colanns<-", "is.annmatrix", "rowanns", "rowanns<-" ], "_help": [ { "page": "annmatrix", "title": "annmatrix Objects and Basic Functionality", "topics": [ "$.annmatrix", "$<-.annmatrix", "@.annmatrix", "@<-.annmatrix", "annmatrix", "colanns", "colanns<-", "rowanns", "rowanns<-" ] }, { "page": "autocomplete", "title": "Auto Complete Functions for annmatrix Class", "topics": [ ".AtNames.annmatrix", ".DollarNames.annmatrix", "autocomplete" ] }, { "page": "bind", "title": "Bind several annmatrix Objects Together", "topics": [ "bind", "cbind.annmatrix", "rbind.annmatrix" ] }, { "page": "convert", "title": "Convert annmatrix Objects to and from Other Types", "topics": [ "as.annmatrix", "as.annmatrix.default", "as.annmatrix.matrix", "as.matrix.annmatrix", "convert", "is.annmatrix" ] }, { "page": "groupgenerics", "title": "Group Generic Functions for annmatrix Class", "topics": [ "chooseOpsMethod.annmatrix", "groupgenerics", "Ops.annmatrix" ] }, { "page": "matrixgenerics", "title": "Matrix Generic Functions for annmatrix Class", "topics": [ "%*%.annmatrix", "matrixgenerics" ] }, { "page": "pca", "title": "Principal Component Analysis for annmatrix Objects", "topics": [ "pca", "prcomp.annmatrix" ] }, { "page": "print", "title": "Print annmatrix Object", "topics": [ "print", "print.annmatrix" ] }, { "page": "scale", "title": "Scaling and Centering of annmatrix Objects", "topics": [ "scale", "scale.annmatrix" ] }, { "page": "stack", "title": "Stack an annmatrix object", "topics": [ "stack", "stack.annmatrix" ] }, { "page": "subset", "title": "Subset annmatrix Objects", "topics": [ "subset", "[.annmatrix" ] }, { "page": "transpose", "title": "Transposing annmatrix Objects", "topics": [ "t.annmatrix", "transpose" ] } ], "_readme": "https://github.com/karoliskoncevicius/annmatrix/raw/HEAD/README.md", "_rundeps": [], "_score": 4.593286067020458, "_indexed": true, "_nocasepkg": "annmatrix", "_universes": [ "karoliskoncevicius" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-07-09T06:30:15.000Z", "distro": "resolute", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/f402c598ad7d5d6fa3e2bf350278fb3720066a88fe84d95543ed21e2ab8c84b6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.6.1", "os": "linux", "version": "0.1.2", "date": "2026-07-09T06:30:19.000Z", "distro": "resolute", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/c758a0118136345feb5a64ae6aa54074c620683f11d640b29ce06d4568811f7b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-07-09T06:30:18.000Z", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/880c0dbdc0c09961438f494bf827b5bce076700349dce2e0fd7802482bd8e378", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.6.1", "os": "mac", "version": "0.1.2", "date": "2026-07-09T06:30:07.000Z", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/b005c1850add6d50354745154fcfc25a9dc219c331dab16d4347bb8821acc5a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-07-09T06:30:02.000Z", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/089c653fbb6ec915d772b1901596b3481db060e8bb712ee29aef236795b87ace", "status": "success", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-07-09T06:29:46.000Z", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/01463e297c1bb83e817281b78af6929c800c5d993ef81bd8b35b572a7ba78295", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.5.3", "os": "win", "version": "0.1.2", "date": "2026-07-09T06:29:42.000Z", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/5a42252c65aa034e75c225c6082dcf43a365915d72db64579fa3f7f67a0567c4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" }, { "r": "4.6.1", "os": "win", "version": "0.1.2", "date": "2026-07-09T06:29:42.000Z", "commit": "d41cc0773a90659e5607380db17cede3ccecb91f", "fileid": "https://r2.ropensci.org/8c7b3fd60c84b993492d092a3e8ca158ee7470879085a354defbf3c77ec5a835", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/karoliskoncevicius/actions/runs/28998635207" } ] }